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last edited 1 month ago by gdew004
Contents of CM Wiki
User Documentation
- Introductory links (mainly) for New Users
- A Collection of How-Tos within Cm
- Change Memory Allocation Parameters
- Time Varying Boundary Conditions For Advection Diffusion Equation Problems
- Mesh Export Cmgui 2 Cm
- Exporting signals from cellML in cm to Unemap
- cm-debug version: reading .irgrid files
- Testing your new version of cmiss before submitting
- Run the cm-debug-clear-malloc test
- Exporting exelem and exnode file from Grid-based FEM
- Updating a tricubic slave mesh with host mesh fitting
- How I found out about using the WIKI
- How to generate a rapid prototype of your mesh * Group Specific (i.e. bioelectric, mechanic) collections of links
- Bidomain for notes on development of Bidomain part of cm.
- Finite Elasticity for notes of mechanics development within cm.
- Coupled Electro Mechanics for notes on solving coupled electromechanics.
- Write out material points positions If you would like to know the coordinates of material points in the mesh.
- Recording and discussing bugs and ideas for future features
- Code Repository
- Perl script to create a thick-walled cylinder node file createMesh.com
- Perl script to convert exelem to ipelem files: http://www.cmiss.org/cm/wiki/ex2ipelem/view
- Perl script to convert bilinear mesh in 2d coord system to a trilinear mesh in a 3d coord system of known uniform thickness convert2d23d
- Perl Repository for cm stuff
- Link to all perl modules available within cm for your use:
http://cmiss.bioeng.auckland.ac.nz/help/PerlUtilities/index.html
- Link to all perl modules available within cm for your use:
- Useful Other Links
- Using LoadLeveler to run cm on the IBM p595 (hpc.bioeng)
- Using HPCx
- Using CARP
- [Using TETGEN]?
- [Using GMSH]?
- HPC tips
- Data resources
- Can't find what you are looking for?
- Try the frontend, cmgui, wiki
Developer Documentation
- Development Guidelines
- Programmers Style Guides
- Install cm on a laptop for development
- Editing cm source
- cm build speed enhancements through use of local hard drive
- Compiler Issues
- Using the Cross compilers for win32 and glibc21 from linux.
- Notes on Compiling a local version of CMISS on a Mandrake 10 Linux system
- Notes on compiling a local version of cmiss on a Xeon machine
- Notes on compiling a local version of cmiss on IA-32 using the Intel compilers
- Notes on compiling a local version of cmiss on a ia64 machine with MKL library's
- Development Branches and Merging Changes
- Notes on EngsciLab CMISS.
- General code information
- List of modules in cm
- CMISS File Extensions
- A summary of cm field parameters including comments on versions and scale factors.
- Itemised cm code errors
- Everything CVS
- Configuring your CVS environment variables
- Introduction to CVS, see also the CVS manual
- Configuring the automatic CVS update
- Setting Up for CMISS CVS Access
- Change CVS Root
- If you have an old version with the old CVS_ROOT in CVS/Root then use script to change them all so you can e.g. properly
cvs diff.
- If you have an old version with the old CVS_ROOT in CVS/Root then use script to change them all so you can e.g. properly
- Examples
- Overview of test examples
- CMISS Examples (Examples tested each night.)
- Complete list of test examples (Above examples plus more.)
- View Failed test examples
- Useful Other Links
- Debugging CMISS
- Profiling Code to estimate time spent in individual routines, to help make your code more efficent.
- Collector to present new ideas.
- The Strategy for Introducing Distributed Memory Multiprocessing to CMISS has now been changed to start afresh with openCMISS rather than evolve from cm.
- Using HPCx
- Using NGS
- OMP code notes