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- Info
Completed Steps
- Research possible FE codes. (See Scientific Modelling Software.)
- Determine a test problem. (Model Bidomain on Full Ventricles.)
- Evaluate Sundance. (See Using Sundance.)
- Evaluate libMesh and compare with cm. (Karl? Shane?)
- Select a framework. (Using libMesh/PETSc.)
- Adapt libMesh transient diffusion example to only assemble the constant
system matrices once. (Done)
- Adapt the CMISS examples framework to include examples of using libMesh.
- Translation of meshes from cm/cmgui to a libMesh format.
- Currently Travis has code to export (most of) exelem and exnode files which in turn are converted to UNV mesh
format and read into libmesh.
- Cell Model
- A simple Cubic Model has been created that provides implementation of a cubic model.
- An Aliev cell model (modified FHN model for GI work) has been created to recreate models of the stomach, intestines, etc.
- A simple integrator has been created for use with these models.
- Waiting for a CellML implementation that will replace these simple implementations.
- Compare solutions for simple reaction-diffusion using libmesh to cmiss.
- Can transfer data from CM to libMesh and recreate some of the GI examples. (See "this page":http://www.cmiss.org/openCMISS/wiki/ReadingInCMISSDataUsingMeshData.)
- Have compiled versions of libMesh/PETSc/HYPRE combination on bioeng22 and hpc platforms.
- Interpretation of CMISS-style fibre angles as angles for Cardan rotations
from element reference coordinates to material coordinates.
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