Minutes 2 October 2006
Present: Travis, Karl, Jagir, Shane.
An "audio recording":ftp://ftp.bioeng.auckland.ac.nz/cmiss/opencmiss/meeting-2006-10-02.ogg is available.
Example framework
- coming together.
Cellml incorporation.
- Jagir been looking at cellml code generator.
- Travis has a paper that describes how operator-splitting is done in cm.
- Does the cell model need to be dlopen'ed?
- dlopen provides a way to deal with namespaces when there is more than one
model for more than one type of cell.
- Could redefine function names at compile time if linked in statically.
- Not important right now as model distribution can be available at compile time.
- dlopen provides a way to deal with namespaces when there is more than one
model for more than one type of cell.
- Variation in cell parameters through space will be required.
Bidomain class
- Travis looking at making a bidomain class
(in the same way as Navier-Stokes has a class in libMesh).
- Would set up transmembrane and extracellular potential variables and provide a way of solving it.
Demo
- Shane suggested a gui for a demo of code using libMesh.
- Would provide interfaces to change some parameters and re-solve.